Ok, somebody needs to fix this...(using 2.1.2)
I have two processes because I'm printing multiple parts on a print bed. Both process use the left extruder so I have to use the workaround I mentioned before where I set the tool temperature on layer 2 to the same as layer 1 so that the tool won't switch to T0.
So.. I have no idea why, but I get the below code in layer 5. So it prints layers 1-4 ok and on layer 5 starts trying to print on the wrong tool... ruining the print and making me start over again

!
What the heck is going on? Neither of my processes set the temperature on anything but layer 1 and 2.
The actual tool change temperature is being inserted on layer 3-5 though instead of 2.
; layer 3, Z = 0.36
; tool H0.2 W0.42
M140 S95 T0
M104 S242 T1
...
; layer 4, Z = 0.36
M140 S95 T0
M104 S242 T1
...
; layer 5, Z = 0.56
M140 S95 T0
It seems for multiple processes (I selected print continuous layer by layer) that the layer logic and temperature logic is screwed up.
Hm... I reported this tool switching issue a couple versions ago... makes me feel ignored.