There are many options in the software to control this. FIrst of all, you want to tune your retraction settings to make sure you have those right before messing with anything else. The best way to do that is with a part that requires you to move over open space repeatedly. For example, this one:
http://www.thingiverse.com/thing:30171. Just keep increasing the retraction distance until you don't see strings between the pillars. Then go back and print the boat part again.
At that point, it would be useful to know a bit more about your printer if you are still having trouble. What brand is it? What type of plastic are you using? Can you post your current factory file? The next settings you would play with are likely the retraction extra restart distance and coasting, but it's good to know more info first.