I'm noticing a problem with S3D v3.0 that I didn't have before.
I am using S3D with a Makerbot Rep 1 Dual and a Makerbot Rep 2X, standard S3D profiles set to high quality.
I notice that after the extruder priming line is drawn, a fairly long retraction takes place, but then no corresponding priming operation happens before printing. When I was using Skirt, this did not matter, since a section of the skirt was not drawn and it did not matter. However, I turned off Skirt (tired of scraping little bits of the platform when done), and now the beginning of the first layer is not drawn, or drawn thinly.
In a related note, I am using the new dual extrusion functionality (which is mostly fantastic), and I notice that a similar retraction/priming problem seems to be affecting the ooze shield.
Basically, the ooze shield seems very wispy and fragile, on the first object printed. I find that if I have multiple dualstrusion objects printing, for example 4 objects laid out as a square, the ooze shield on the right front object is almost nonexistent. The ooze shield on the other copies of the object is better. This almost seems like a retraction is taking place, and then no priming occurs before the ooze shield starts printing.
A workaround for both is to stick a small sacrificial object on the build plate, and use this to force priming, but it seems a waste.