The S3D screen shows this (which looks right):
The machine control panel screen looks like this after homing (which all looks right to me):
My machine settings in the profile look like this:
Note on that last dialog that I had to change the settings that defaulted in when I selected the built-in PrintrBot Simple Metal profile. It has the Homing Dir for the Y axis at Min instead of Max. Assuming that I'm no misunderstanding something, the Y axis homes to it's extreme positive location.
Obviously I've got some sort of software setting out of whack -- can anyone point me in the right direction?