Dang, I wish I would have read your post before today, I found another way to fix it after reading
http://forum.simplify3d.com/viewtopic.p ... bles#p3171
I just went into process settings --> scipts tab, then changed "M126 S[fan_speed_pwm]" to "M126 S[fan0_speed_pwm]" and that also fixes it. I read through the gcode and verified the fix, and took the time to verify that all the other variables were good to go too. Its nice not having to wait around for the printer to finish the 1st layer before turning on the fan manually again