I'm wondering what my workflow should be to use Simplify3D with OctoPrint and my LulzBot Mini. The Mini has a special set of startup and shutdown gcode. I know that OctoPrint has a settings section for GCODE Scripts where I can paste the Mini startup and shutdown sequences, but doing so will cause the sequence to run twice if I use the LulzBot edition of Cura, since it auto-injects the startup and shutdown sequences into the gcode.
Where should I put these things so that everything places nice and I can use these tools interchangeably?