Thanks! I'll take a look at it.
I've got my cooling set up by layer ranges for now, and I'm getting better prints than ever. Although it's a bit of a pain to set up initially, that gives me complete control and I don't have to worry about damaging the fan if S3D tries to run it too slow.
I think I will put in a feature request to add a minimum fan speed setting. My understanding is that a large number of printers use PWM with 2 wire internal-controller fans, and the last thing I want to do is kill my fan.