It occurred to me that I should probably have posted this here instead of under general discussion:
Simplify3D was the industry standard for printing RC airplanes until Cura and PrusaSlicer fixed the issues they had where only the outer shell would print. Now with Simplify3d V5 it is doing the same thing that Cura and PrusaSlicer used to do. When I slice my parts only the outer skin shows in the preview. Is there some way to fix this? Speaking with 3dLabPrint it seems to be something to do with how it tries to treat overlapping models and join them.
Before slicing: https://photos.app.goo.gl/suB8QkDvRuvFeTWN7
After slicing: https://photos.app.goo.gl/vPjga6kVhjhukeRn9
Also, the height modifier for each process under the Advanced tab is gone. Why use different processes if you can't define the height they take place at. If these aren't fixed I'll be asking for a refund.