It appears this ("Only retract when crossing open spaces") may still be an issue even in 3.1.1. I noticed zits on the outside of a model and I watched the printing live and noticed the travel path for the support material was causing these. There's no retract as it transitions from one set of support to another. See attached GCode if your interested in the details. The offending support material is the mound that is inside of the model. The travel is from the right most model to the left. The zits end up being on the left model, front right (in reference to looking at the build plate).
Below is the GCode, if anyone is interested in taking a look.
https://www.dropbox.com/s/rzlh03geyzf5z ... gcode?dl=0