Ah, OK. The three processes were left over from the registry because you didn't completely clear it the first time. The FFFWindow key that I suggested to delete was just to reset your profiles. So, that's not unexpected.
Try again by running the uninstaller for S3D, then deleting the registry key HKCU/Software/Simplify3D and all its subkeys, then reinstalling. If it crashes again, right click on the Simplify3D key and select export then post the file here and I will take a look.