Hi,
I am using a Prusa i3 MK2 and used to have good results with Simplify3D. After a while of stopping 3D printing activity I started once again and tried several prints using both Slic3r & Simplify3D. My Slic3r prints come with no top layer issues but my Simplify3D prints have disastrous gaps on the top layer. The top layer looks as if the plastic had melted through. I am printing with Prusa ABS filament and at 10 microns layer height I had 6 top layers and 30% infill and still had this odd behaviour. I do not face this issue when printing from Slic3r. I prefer Simplify3D because it gives me better control over supports.